Package: parafac4microbiome
Title: Parallel Factor Analysis Modelling of Longitudinal Microbiome
        Data
Version: 1.3.2.9000
Authors@R: c(
    person("Geert Roelof", "van der Ploeg", , "g.r.ploeg@uva.nl", role = c("aut", "cre"),
           comment = c(ORCID = "0009-0007-5204-3386")),
    person("Johan", "Westerhuis", , "j.a.westerhuis@uva.nl", role = "ctb",
           comment = c(ORCID = "0000-0002-6747-9779")),
    person("Anna", "Heintz-Buschart", , "a.u.s.heintzbuschart@uva.nl", role = "ctb",
           comment = c(ORCID = "0000-0002-9780-1933")),
    person("Age", "Smilde", , "a.k.smilde@uva.nl", role = "ctb",
           comment = c(ORCID = "0000-0002-3052-4644")),
    person("University of Amsterdam", role = c("cph", "fnd")))
Description: Creation and selection of PARAllel FACtor Analysis
        (PARAFAC) models of longitudinal microbiome data. You can
        import your own data with our import functions or use one of
        the example datasets to create your own PARAFAC models.
        Selection of the optimal number of components can be done using
        assessModelQuality() and assessModelStability(). The selected
        model can then be plotted using plotPARAFACmodel(). The
        Parallel Factor Analysis method was originally described by
        Caroll and Chang (1970) <doi:10.1007/BF02310791> and Harshman
        (1970)
        <https://www.psychology.uwo.ca/faculty/harshman/wpppfac0.pdf>.
License: MIT + file LICENSE
Encoding: UTF-8
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.3.2
Imports: compositions, cowplot, doParallel, dplyr, foreach, ggplot2,
        ggpubr, lifecycle, magrittr, methods, multiway, parallel,
        pracma, rlang, rTensor, stats, tidyr
Depends: R (>= 2.10)
LazyData: true
Suggests: knitr, phyloseq, rmarkdown, TreeSummarizedExperiment (>=
        2.16.1), SummarizedExperiment (>= 1.38.1), testthat (>= 3.0.0),
        withr, NPLStoolbox, CMTFtoolbox, readr, stringr, scales,
        ggpattern
Config/testthat/edition: 3
VignetteBuilder: knitr
URL: https://grvanderploeg.com/parafac4microbiome/,
        https://github.com/GRvanderPloeg/parafac4microbiome/
BugReports: https://github.com/GRvanderPloeg/parafac4microbiome/issues
Config/pak/sysreqs: cmake make libicu-dev
Repository: https://grvanderploeg.r-universe.dev
Date/Publication: 2025-09-24 09:12:10 UTC
RemoteUrl: https://github.com/grvanderploeg/parafac4microbiome
RemoteRef: HEAD
RemoteSha: b7b9770abcc11c14c21ca8fe5f5f468da36156e5
NeedsCompilation: no
Packaged: 2026-06-13 08:31:17 UTC; root
Author: Geert Roelof van der Ploeg [aut, cre] (ORCID:
    <https://orcid.org/0009-0007-5204-3386>),
  Johan Westerhuis [ctb] (ORCID: <https://orcid.org/0000-0002-6747-9779>),
  Anna Heintz-Buschart [ctb] (ORCID:
    <https://orcid.org/0000-0002-9780-1933>),
  Age Smilde [ctb] (ORCID: <https://orcid.org/0000-0002-3052-4644>),
  University of Amsterdam [cph, fnd]
Maintainer: Geert Roelof van der Ploeg <g.r.ploeg@uva.nl>